2017

 

Fukushima, T., Yoshihara, H., Furuta, H., Hakuno, F, Iemura, S-I., Natsume, T., Nakatsu, Y., Kamata, H., Asano, T., Komada, M., and Takahashi, S. (2017) USP15 attenuates IGF-I signaling by antagonizing Nedd4-induced IRS-2 ubiquitination. Biochem. Biophys. Res. Commun. 484, 522-528

 

Horie, T., Kawamata, T., Matsunami, M., and Ohsumi, Y. (2017) Recycling of iron via autophagy is critical for the transition from glycolytic to respiratory growth. J. Biol. Chem. 10.1074/jbc.M116.762963

 

Kawaguchi, K., Uo, K., Tanaka, T., and Komada, M. (2017) Tandem UIMs confer Lys48 ubiquitin chain substrate preference to deubiquitinase USP25. Sci. Rep. 7, 45037

 

Kawamata, T., Horie, T., Matsunami, M., Sasaki, M., and Ohsumi, Y. (2017) Zinc starvation induces autophagy in yeast. J. Biol. Chem. 10.1074/jbc.M116.762948

Komada, M., Reincke, M., and Theodoropoulou, M. (2017) USP8, ubiquitin-specific protease 8. Encyclopedia of Signaling Molecules, 2nd Edition, in press

 

Taguchi, Y., Horiuchi, Y., Kano, F., and Murata, M. (2017) Novel prosurvival function of Yip1A in human cervical cancer cells: constitutive activation of the IRE1 and PERK pathways of the unfolded protein response. Cell Death Dis. 8, e2718

 

 

2016

 

Burana, D., Yoshihara, H., Tanno, H., Yamamoto, A., Saeki, Y., Tanaka, K., and Komada, M. (2016) Ankrd13 family of ubiquitin-interacting motif-bearing proteins regulates VCP/p97-mediated lysosomal traffic of caveolin-1. J. Biol. Chem. 291, 6218-6231
 
Chadani, Y., Niwa, T., Chiba, S., *Taguchi, H., and *Ito, K. (*co-correspondence) (2016) Integrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing. Proc. Natl. Acad. Sci. USA 113, E829-38
 
Hansel-Hertsch, R., Beraldi, D., Lensing, S.V., Marsico, G., Zyner, K., Parry, A., Di Antonio, M., Pike, J., Kimura, H., Narita, M., Tannahill, D., and Balasubramanian, S. (2016) G-quadruplex structures mark human regulatory chromatin. Nat. Genet. 48, 1267-1272
 
Hayashi, K., Inoshita, N., Kawaguchi, K., Ardisasmita, A.I., Suzuki, H., Fukuhara, N., Okada, M., Nishioka, H., Takeuchi, Y., Komada, M., Takeshita, A., and Yamada, S. (2016) The USP8 mutational status may predict drug susceptibility in corticotroph adenomas of Cushing's disease. Eur. J. Endocrinol. 174, 213-226
 
Kaimori, J.Y., Maehara, K., Hayashi-Takanaka, Y., Harada, A., Fukuda, M., Yamamoto, S., Ichimaru, N., Umehara, T., Yokoyama, S., Matsuda, R., Ikura, T., Nagao, K., Obuse, C., Nozaki, N., Takahara, S., Takao, T., Ohkawa, Y., *Kimura, H., and *Isaka, Y. (*co-correspondence) (2016) Histone H4 lysine 20 acetylation is associated with gene repression in human cells. Sci. Rep. 6, 24318
 
Kang, Y., Wang, J., Neff, A., Kratzer, S., Kimura, H., and Davis, R.E. (2016) Differential chromosomal localization of centromeric histone CENP-A contributes to nematode programmed DNA Elimination. Cell Rep. 16, 2308-23016
 
Katsushima, K., Natsume, A., Ohka, F., Shinjo, K., Hatanaka, A., Ichimura, N., Sato, S., Takahashi, S., Kimura, H., Totoki, Y., Shibata, T., Naito, M., Kim, H.J., Miyata, K., Kataoka K., and Kondo, Y. (2016) Targeting the Notch-regulated non-coding RNA TUG1 for glioma treatment. Nat. Commun. 7, 13616
 
Koide, S., Oshima, M., Takubo, K., Yamazaki, S., Nitta, E., Saraya, A., Aoyama, K., Kato, Y., Miyagi, S., Nakajima-Takagi, Y., Chiba, T., Matsui, H., Arai, F., Suzuki, Y., Kimura, H., Nakauchi, H., Suda, T., Shinkai Y., and Iwama, A. (2016) Setdb1 maintains hematopoietic stem and progenitor cells by restricting the ectopic activation of nonhematopoietic genes. Blood 128, 638-649
 
Kujirai, T., Horikoshi, N., Sato, K., Maehara, K., Machida, S., Osakabe, A., Kimura, H., Ohkawa, Y., and Kurumizaka, H. (2016) Structure and function of human histone H3.Y nucleosome. Nucleic Acids Res. 44, 6127-6141
 
Martins, N.M., Bergmann, J.H., Shono, N., Kimura, H., Larionov, H., Masumoto, H., and Earnshaw, W.C. (2016) Epigenetic engineering shows that a human centromere resists silencing mediated by H3K27me3/K9me3. Mol. Biol. Cell 27, 177-196
 
Nakajima, E., Shimaji, K., Umegawachi, T., Tomida, S., Yoshida, H., Yoshimoto, N., Izawa, S., Kimura, H., and Yamaguchi, M. (2016) The histone deacetylase gene Rpd3 is required for starvation stress resistance. PLoS One 11, e0167554
 
Niwa. T, Fujiwara, K., and Taguchi, H. (2016) Identification of novel in vivo obligate GroEL/ES substrates based on data from a cell-free proteomics approach. FEBS Lett. 590, 251-257
 
Ohzeki, J., Shono, N., Otake, K., Martins, N.M., Kugou, K., Kimura, H., Nagase, T., Larionov, V., Earnshaw, W.C., and Masumoto, H. (2016) KAT7/HBO1/MYST2 regulates CENP-A chromatin assembly by antagonizing Suv39h1-mediated centromere inactivation. Dev. Cell 37, 413-427
 
*Oka, M., Mura, S., Yamada, K., Sangel, P., Hirata, S., Maehara, K., Kawakami, K., Tachibana, T., Ohkawa, Y., Kimura, H., and *Yoneda, Y. (*co-correspondence) (2016) Chromatin-prebound Crm1 recruits Nup98-HoxA9 fusion to induce aberrant expression of Hox cluster genes. Elife 5, e09540
 
*Sato, Y., Kujirai, T., Arai, R., Asakawa, H., Ohtsuki, C., Horikoshi, N., Yamagata, K., Ueda, J., Nagase, T., Haraguchi, T., Hiraoka, Y., Kimura, A., Kurumizaka, H., and *Kimura, H. (*co-correspondence). (2016) A genetically encoded probe for live-cell imaging of H4K20 monomethylation. J. Mol. Biol. 428, 3885-3902
 
Shang, W.H., Hori, T., Westhorpe, F.G., Godek, K.M., Toyoda, A., Misu, S., Monma, N., Ikeo, K., Carroll, C.W., Takami, Y., Fujiyama, A., Kimura, H., Straight, A.F., and Fukagawa, T. (2016) Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres. Nat. Commun. 7, 13465

Shimaji, K., Konishi, T., Yoshida, H., Kimura, H., and Yamaguchi, M. (2016) Genome-wide genetic screen identified the link between dG9a and epidermal growth factor receptor signaling pathway in vivo. Exp. Cell Res. 346, 53-64
 
Sim, S.H., Niwa, T., Taguchi, H., and Aida, T. (2016) Supramolecular nanotube of chaperonin GroEL: length control for cellular uptake using single-ring GroEL mutant as end-capper. J. Am. Chem. Soc. 138, 11152-11155
 
Suzuki, M., Takagi, C., Miura, S., Sakane, Y., Sakuma, T., Sakamoto, N., Endo, T., Kamei, Y., Sato, Y., Kimura, H., Yamamoto, T., Ueno, N., and Suzuki, K.T. (2016) In vivo tracking of histone H3 lysine 9 acetylation in Xenopus laevis during tail regeneration. Genes Cells 21, 358-369
 
Suzuki, S., Kato, H., Suzuki, Y., Chikashige, Y., Hiraoka, Y., Kimura, H., Nagao, K., Obuse, C., Takahata, S., and Murakami, Y. (2016) Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast. Nucleic Acids Res. 44, 4147-4162
 
Urahama, T., Harada, A., Maehara, K., Horikoshi, H., Sato, K., Sato, Y., Shiraishi, K., Sugino, N., Osakabe, A., Tachiwana, H., Kagawa, W., Kimura, H., Ohkawa, Y., and Kurumizaka, H. (2016) Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis. Epigenetics Chromatin 9, 2


Yamamoto, H., Fujioka, Y., Suzuki, S.W., Noshiro, D., Suzuki, H., Kondo-Kakuta, C., Kimura, Y., Hirano, H., Ando, T., Noda, N.N., and Ohsumi, Y. (2016) The intrinsically disordered protein Atg13 mediates supramolecular assembly of autophagy initiation complexes. Dev. Cell 38, 86-99

Yamasaki, A., Watanabe, Y., Adachi, W., Suzuki, K., Matoba, K., Kirisako, H., Kumeta, H., Nakatogawa, H., Ohsumi, Y., Inagaki, F., and Noda, N.N. (2016) Structural basis for receptor-mediated selective autophagy of aminopeptidase I aggregates. Cell Rep. 16, 19-27
 
Yanagawa, T., Denda, K., Inatani, T., Fukushima, T., Tanaka, T., Kumaki, N., Inagaki, Y., and Komada, M. (2016) Deficiency of X-linked protein kinase Nrk during pregnancy triggers breast tumor in mice. Am. J. Pathol. 186, 2751-2760